Domain ID e1vvmN1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 001318752
Type: Automatic domain
Parent: e4v19N1
Range: N:1-138
Ligands: MG
PDB: 1vvm
PDB Description:
Hsap BLAST neighbor: Q9BYD1
Species:

Structure of domain e1vvmN1

Domains in the same chain:

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e1vvmN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e1vvm01 0:2-83 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1vvm11 1:2-98 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e1vvm21 2:4-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vvm31 3:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vvm41 4:1-50 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e1vvm51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vvm71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e1vvm81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1vvm91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1vvmD2 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vvmD1 D:127-273 SH3 SH3 SH3
e1vvmF1 F:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vvmG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vvmH2 H:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vvmH1 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vvmI1 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1vvmI2 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e1vvmN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vvmO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vvmR1 R:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1vvmU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e1vvmV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1vvmW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vvmX1 X:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vvmY1 Y:2-103 SH3 SH3 SH3
e1vvmZ1 Z:1-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vvmZ2 Z:93-183 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e1vvmN1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vvmU1 N:X,Y,Z->U:x,y,z Ribosomal protein L20 Interaction Interface Pymol
e1vvmU1 N:x,y,z->E:X,Y,Z Ribosomal protein L20 Interaction Interface Pymol
e1vvmV1 N:X,Y,Z->V:x,y,z Ribosomal protein L21p Interaction Interface Pymol