Domain ID e1vvnL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001318789
Type: Automatic domain
Parent: e2uubL1
Range: L:5-129
Ligands: MG
PDB: 1vvn
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e1vvnL1

Domains in the same chain:

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e1vvnL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e1vvnC2 C:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vvnC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vvnE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vvnE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vvnF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1vvnG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vvnH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vvnH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vvnJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vvnK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vvnL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vvnN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vvnO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vvnP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1vvnR1 R:19-88 HTH HTH tri-helical
e1vvnT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1vvnL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vvnH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol