Domain ID e1vvo51

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L32p
UID: 001318826
Type: Automatic domain
Parent: e2j0151
Range: 5:2-60
Ligands: MG
PDB: 1vvo
PDB Description:
Species:

Structure of domain e1vvo51

Domains in the same chain:

Download Pymol

e1vvo51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e1vvo01 0:2-83 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e1vvo11 1:2-98 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28
e1vvo21 2:4-72 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1vvo31 3:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1vvo41 4:1-50 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e1vvo51 5:2-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vvo71 7:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e1vvo81 8:2-65 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e1vvo91 9:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e1vvoD2 D:2-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vvoD1 D:127-273 SH3 SH3 SH3
e1vvoF1 F:6-207 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1vvoG1 G:2-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1vvoH2 H:2-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vvoH1 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1vvoI1 I:1-53 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e1vvoI2 I:54-146 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e1vvoN1 N:1-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1vvoO1 O:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vvoR1 R:1-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e1vvoU1 U:2-118 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e1vvoV1 V:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e1vvoW1 W:1-113 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1vvoX1 X:3-94 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vvoY1 Y:2-103 SH3 SH3 SH3
e1vvoZ1 Z:1-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vvoZ2 Z:93-183 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Structural contacts of domain e1vvo51 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vvoW1 5:x,y,z->W:X,Y,Z Ribosomal protein L22 Interaction Interface Pymol
e1vvoR1 5:x,y,z->R:X,Y,Z Prokaryotic ribosomal protein L17 Interaction Interface Pymol
e1vvoV1 5:X-1/2,-Y-1/2,-Z->V:x,y,z Ribosomal protein L21p Interaction Interface Pymol