Domain ID e1vvpE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 001318836
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-155
PDB: 1vvp
PDB Description:
Species:

Structure of domain e1vvpE2

Domains in the same chain:

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e1vvpE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vvpE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e1vvpC2 C:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vvpC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vvpE1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vvpE2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vvpF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1vvpG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vvpH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vvpH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vvpJ1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vvpK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vvpL1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vvpN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vvpO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vvpP1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1vvpR1 R:19-88 HTH HTH tri-helical
e1vvpT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1vvpE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vvpH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e1vvpH1 E:X,Y,Z->H:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol