Domain ID e1vwvY1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001297764
Type: Automatic domain
Parent: e2uubL1
Range: Y:2-145
PDB: 1vwv
PDB Description:
Hsap BLAST neighbor: P62266
Species:

Structure of domain e1vwvY1

Domains in the same chain:

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e1vwvY1 Y:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e1vwva1 a:36-105 HTH HTH winged
e1vwvb1 b:2-98 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vwvc1 c:2-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vwvC2 C:20-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e1vwvC1 C:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e1vwvd1 d:5-67 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vwve1 e:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vwvE1 E:3-91 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vwvE2 E:92-225 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vwvF3 F:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1vwvF2 F:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vwvF1 F:176-261 SH3 SH3 SH3
e1vwvg1 g:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vwvG1 G:20-225 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vwvh1 h:2-319 beta-propeller-like beta-propeller 7-bladed
e1vwvH1 H:1-226 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vwvI1 I:4-105 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vwvI2 I:106-187 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vwvJ1 J:2-200 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vwvL1 L:1-96 HTH HTH winged
e1vwvN1 N:20-143 Bacillus chorismate mutase-like L30e-like L30e-like
e1vwvO1 O:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e1vwvO2 O:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vwvP1 P:11-137 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vwvU1 U:2-144 HTH HTH winged
e1vwvV1 V:15-121 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vwvX2 X:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vwvX1 X:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vwvY1 Y:2-145 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vwvZ1 Z:2-135 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e

Structural contacts of domain e1vwvY1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vwvX1 Y:X,Y,Z->X:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol