Domain ID e1vx5b1

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_S27e
UID: 001298037
Type: Automatic domain
Parent: e1qxfA1
Range: b:2-84
PDB: 1vx5
PDB Description:
Hsap BLAST neighbor: P42677
Species:

Structure of domain e1vx5b1

Domains in the same chain:

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e1vx5b1 b:2-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e1vx5a1 a:2-99 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vx5b1 b:2-84 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vx5B2 B:21-113 Ribosomal protein L25-like 40S ribosomal protein S3A N-terminal domain 40S ribosomal protein S3A N-terminal domain
e1vx5B1 B:114-233 T-fold 40S ribosomal protein S3A C-terminal domain 40S ribosomal protein S3A C-terminal domain
e1vx5c1 c:5-68 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vx5C3 C:202-276 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vx5d1 d:5-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vx5D2 D:1-99 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vx5D1 D:92-227 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vx5E3 E:2-116 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1vx5E2 E:117-175 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vx5E1 E:176-263 SH3 SH3 SH3
e1vx5f1 f:82-152 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1vx5F1 F:14-204 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vx5g1 g:2-314 beta-propeller-like beta-propeller 7-bladed
e1vx5G1 G:1-237 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e1vx5H1 H:5-107 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vx5H2 H:108-193 Alpha-lytic protease prodomain-like 40S ribosomal protein S7-A 40S ribosomal protein S7-A
e1vx5I1 I:2-207 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1vx5K1 K:1-98 HTH HTH winged
e1vx5M1 M:9-132 Bacillus chorismate mutase-like L30e-like L30e-like
e1vx5N2 N:2-82 HTH 40S ribosomal protein S13 N-terminal domain 40S ribosomal protein S13 N-terminal domain
e1vx5N1 N:83-151 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vx5O1 O:16-151 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vx5R1 R:1-129 HTH HTH FF domain
e1vx5T1 T:4-144 HTH HTH winged
e1vx5U1 U:16-119 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vx5V1 V:1-82 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e) 40S ribosomal protein rpS21 (S21e)
e1vx5W2 W:2-67 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vx5W1 W:68-130 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vx5X1 X:2-142 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vx5Y1 Y:3-128 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1vx5Z1 Z:41-115 HTH HTH winged

Structural contacts of domain e1vx5b1 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vx5N2 b:X,Y,Z->N:x,y,z 40S ribosomal protein S13 N-terminal domain Interaction Interface Pymol
e1vx5W2 b:X,Y,Z->W:x,y,z Ribosomal protein S8, N-terminal domain Interaction Interface Pymol
e1vx5H2 b:X,Y,Z->H:x,y,z 40S ribosomal protein S7-A Interaction Interface Pymol
e1vx5V1 b:X,Y,Z->V:x,y,z 40S ribosomal protein rpS21 (S21e) Interaction Interface Pymol