Domain ID e1vy2L1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 001323288
Type: Automatic domain
Parent: e2uubL1
Range: L:5-129
Ligands: MG
PDB: 1vy2
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e1vy2L1

Domains in the same chain:

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e1vy2L1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e1vy2C1 C:2-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1vy2C2 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1vy2E1 E:5-73 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1vy2E2 E:74-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1vy2F1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1vy2G1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1vy2H1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1vy2H2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1vy2J1 J:3-101 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1vy2K1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1vy2L1 L:5-129 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1vy2N1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1vy2O1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1vy2P1 P:1-84 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1vy2R1 R:19-88 HTH HTH tri-helical
e1vy2T1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1vy2L1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1vy2H2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol