Domain ID e1w2bD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000270741
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-175
Ligands: CL
PDB: 1w2b
PDB Description: 50S RIBOSOMAL PROTEIN L5P HMAL5, HL13, RIBOSOMAL PROTEIN L5
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e1w2bD1

Domains in the same chain:

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e1w2bD1 D:10-175 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e1w2b11 1:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1w2b21 2:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1w2bA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1w2bA2 A:91-238 SH3 SH3 SH3
e1w2bB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1w2bC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1w2bD1 D:10-175 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1w2bE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1w2bE2 E:80-173 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1w2bF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1w2bG1 G:12-29,G:63-74 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1w2bH1 H:1-167 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1w2bI1 I:4-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1w2bJ1 J:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1w2bK1 K:1-151 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1w2bL1 L:1-194 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1w2bM1 M:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1w2bN1 N:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1w2bO1 O:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1w2bO2 O:55-144 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1w2bP1 P:1-95 SH3 SH3 SH3
e1w2bQ1 Q:1-151 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1w2bR1 R:1-84 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1w2bS1 S:1-119 SH3 SH3 SH3
e1w2bT1 T:4-57 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1w2bU1 U:1-66 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1w2bV1 V:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1w2bW1 W:7-89 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1w2bX1 X:95-237 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1w2bY1 Y:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1w2bZ1 Z:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1w2bD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1w2bM1 D:X,Y,Z->M:x,y,z Ribonuclease H-like Interaction Interface Pymol