Domain ID e1xmqE2

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Ribosomal_S5_C
UID: 000071198
Type: Automatic domain
Parent: e1pkpA2
Range: E:74-143
PDB: 1xmq
PDB Description: 30S Ribosomal Protein S5
UniProt: Q5SHQ5
Species: Thermus thermophilus

Structure of domain e1xmqE2

Domains in the same chain:

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e1xmqE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1xmqE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e1xmqB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1xmqC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1xmqC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1xmqD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1xmqE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1xmqE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xmqF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1xmqG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1xmqH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1xmqH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1xmqI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1xmqJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1xmqK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1xmqL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xmqM1 M:2-126 HhH/H2TH H2TH H2TH
e1xmqN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1xmqO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1xmqP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1xmqQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xmqR1 R:19-88 HTH HTH tri-helical
e1xmqS1 S:2-81 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1xmqT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1xmqE2 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xmqH2 E:X,Y,Z->H:x,y,z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol
e1xmqD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol