Domain ID e1xpoD1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Rho_RNA_bind
UID: 000023819
Type: Automatic domain
Parent: e1a62A1
Range: D:48-125
PDB: 1xpo
PDB Description: Rho transcription termination factor
UniProt: P0AG30
Species: Escherichia coli

Structure of domain e1xpoD1

Domains in the same chain:

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e1xpoD2 D:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoD1 D:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoD3 D:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Domains in the same PDB:

e1xpoA2 A:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoA1 A:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoA3 A:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xpoB2 B:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoB1 B:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoB3 B:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xpoC2 C:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoC1 C:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoC3 C:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xpoD2 D:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoD1 D:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoD3 D:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xpoE6 E:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoE5 E:48-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoE4 E:129-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e1xpoF2 F:1-47 LEM/SAP HeH motif-like LEM/SAP HeH motif LEM/SAP HeH motif
e1xpoF1 F:48-125 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1xpoF3 F:130-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases

Structural contacts of domain e1xpoD1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1xpoE6 D:X,Y,Z->E:x,y,z LEM/SAP HeH motif Interaction Interface Pymol
e1xpoE5 D:-X+1/2,Y-1/2,-Z->E:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol