ECOD: domain e1y1vS2

Domain ID e1y1vS2

A: few secondary structure elements
X: Rubredoxin-like
H: Rubredoxin-related
T: Rubredoxin-related
F: TFIIS_C

UID:	000185878
Type:	Manual and representative domain
Range:	S:256-309
Ligands:	MG ZN
PDB:	1y1v
PDB Description:	Transcription elongation factor S-II
UniProt:	P07273
Hsap BLAST neighbor:	P23193
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e1y1vS1	S:136-255	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e1y1vS2	S:256-309	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related

Domains in the same PDB:

e1y1vA4	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e1y1vA5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e1y1vA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e1y1vA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e1y1vA3	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e1y1vA7	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e1y1vA1	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e1y1vA6	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e1y1vA8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e1y1vB7	B:20-70,B:90-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e1y1vB6	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e1y1vB3	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e1y1vB5	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e1y1vB2	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e1y1vB1	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e1y1vB4	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e1y1vC2	C:3-41,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e1y1vC3	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e1y1vD1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1y1vE2	E:2-142	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e1y1vE1	E:143-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e1y1vF1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e1y1vG4	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e1y1vG3	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1y1vH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e1y1vI3	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1y1vI4	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1y1vJ1	J:1-65	HTH	RPB10	RPB10
e1y1vK1	K:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e1y1vL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e1y1vS1	S:136-255	RuvA-C	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein	Elongation factor TFIIS domain 2/ Kix domain of creb binding protein
e1y1vS2	S:256-309	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related