ECOD: domain e1ybaD2

Domain ID e1ybaD2

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: NAD(P)-binding Rossmann-fold domains
F: 2-Hacid_dh_C

UID:	000097869
Type:	Automatic domain
Parent:	e2nacA1
Range:	D:108-295
Ligands:	AKG NAD PO4 UNL
PDB:	1yba
PDB Description:	D-3-phosphoglycerate dehydrogenase
UniProt:	P0A9T0
Hsap BLAST neighbor:	O43175
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e1ybaD2

Domains in the same chain:

Download Pymol

e1ybaD3	D:7-107,D:296-326	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ybaD2	D:108-295	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ybaD1	D:327-410	Alpha-beta plaits	ACT-like	ACT-like

Domains in the same PDB:

e1ybaA3	A:7-107,A:296-326	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ybaA2	A:108-295	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ybaA1	A:327-410	Alpha-beta plaits	ACT-like	ACT-like
e1ybaB3	B:7-107,B:296-326	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ybaB2	B:108-295	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ybaB1	B:327-410	Alpha-beta plaits	ACT-like	ACT-like
e1ybaC3	C:7-107,C:296-326	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ybaC2	C:108-295	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ybaC1	C:327-410	Alpha-beta plaits	ACT-like	ACT-like
e1ybaD3	D:7-107,D:296-326	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ybaD2	D:108-295	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ybaD1	D:327-410	Alpha-beta plaits	ACT-like	ACT-like

Structural contacts of domain e1ybaD2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ybaC2	D:x,y,z->C:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1ybaC3	D:x,y,z->C:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1ybaB3	D:x,y,z->B:X,Y-1,Z	Rossmann-related	Interaction Interface Pymol
e1ybaA1	D:-Y-1,X,Z-1/4->A:x,y,z	ACT-like	Interaction Interface Pymol
e1ybaB2	D:x,y,z->B:X,Y,Z	Rossmann-related	Interaction Interface Pymol