ECOD: domain e1ydoB1

Domain ID e1ydoB1

A: a/b barrels
X: TIM beta/alpha-barrel
H: TIM barrels
T: TIM barrels
F: HMGL-like

UID:	000284812
Type:	Automatic domain
Parent:	e1nvmA2
Range:	B:1-298
Ligands:	IOD
PDB:	1ydo
PDB Description:	HMG-CoA Lyase
UniProt:	O34873
Hsap BLAST neighbor:	P35914
Species:

Domains in the same chain:

Download Pymol

e1ydoB1	B:1-298	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Domains in the same PDB:

e1ydoA1	A:1-298	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ydoB1	B:1-298	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ydoC1	C:1-298	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e1ydoD1	D:1-298	TIM beta/alpha-barrel	TIM barrels	TIM barrels

Structural contacts of domain e1ydoB1 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ydoA1	B:x,y,z->A:X,Y,Z	TIM barrels	Interaction Interface Pymol
e1ydoC1	B:X,Y,Z->C:x,y,z	TIM barrels	Interaction Interface Pymol
e1ydoA1	B:-X+2,Y-1/2,-Z+1->A:x,y,z	TIM barrels	Interaction Interface Pymol
e1ydoC1	B:X-1,Y,Z->C:x,y,z	TIM barrels	Interaction Interface Pymol
e1ydoC1	B:x,y,z->C:-X+2,Y-1/2,-Z+1	TIM barrels	Interaction Interface Pymol
e1ydoD1	B:X-1,Y,Z->D:x,y,z	TIM barrels	Interaction Interface Pymol