ECOD: domain e1ygyB4

Domain ID e1ygyB4

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: Formate/glycerate dehydrogenase catalytic domain-like
F: 2-Hacid_dh

UID:	000105141
Type:	Automatic domain
Parent:	e1sc6A3
Range:	B:3-98,B:283-316
PDB:	1ygy
PDB Description:	D-3-phosphoglycerate dehydrogenase
UniProt:	P9WNX3
Hsap BLAST neighbor:	O43175
Species:	Mycobacterium tuberculosis

Domains in the same chain:

Download Pymol

e1ygyB4	B:3-98,B:283-316	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ygyB3	B:99-282	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ygyB2	B:317-451	FwdE/GAPDH domain-like	Serine dehydratase beta chain-like	Serine dehydratase beta chain-like
e1ygyB1	B:452-529	Alpha-beta plaits	ACT-like	ACT-like

Domains in the same PDB:

e1ygyA4	A:3-98,A:283-316	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ygyA3	A:99-282	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ygyA2	A:317-451	FwdE/GAPDH domain-like	Serine dehydratase beta chain-like	Serine dehydratase beta chain-like
e1ygyA1	A:452-529	Alpha-beta plaits	ACT-like	ACT-like
e1ygyB4	B:3-98,B:283-316	Rossmann-like	Rossmann-related	Formate/glycerate dehydrogenase catalytic domain-like
e1ygyB3	B:99-282	Rossmann-like	Rossmann-related	NAD(P)-binding Rossmann-fold domains
e1ygyB2	B:317-451	FwdE/GAPDH domain-like	Serine dehydratase beta chain-like	Serine dehydratase beta chain-like
e1ygyB1	B:452-529	Alpha-beta plaits	ACT-like	ACT-like

Structural contacts of domain e1ygyB4 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1ygyA3	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e1ygyB2	B:x,y,z->B:Y,X,-Z-1/3	Serine dehydratase beta chain-like	Interaction Interface Pymol
e1ygyB4	B:x,y,z->B:Y,X,-Z-1/3	Rossmann-related	Interaction Interface Pymol
e1ygyB2	B:Y,X,-Z-1/3->B:x,y,z	Serine dehydratase beta chain-like	Interaction Interface Pymol
e1ygyB4	B:Y,X,-Z-1/3->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e1ygyA4	B:x,y,z->A:X-Y,X,Z-1/6	Rossmann-related	Interaction Interface Pymol