Domain ID e1yhqD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000067601
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: CL NA
PDB: 1yhq
PDB Description: 50S ribosomal protein L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e1yhqD1

Domains in the same chain:

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e1yhqD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e1yhq11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yhq21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1yhq31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yhqA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1yhqA2 A:91-237 SH3 SH3 SH3
e1yhqB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1yhqC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1yhqD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1yhqE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yhqE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yhqF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1yhqG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1yhqH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1yhqI1 I:66-135 HTH HTH Ribosomal protein L11, C-terminal domain
e1yhqJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1yhqK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1yhqL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yhqM1 M:1-193 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yhqN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1yhqO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yhqP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1yhqP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1yhqQ1 Q:1-95 SH3 SH3 SH3
e1yhqR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1yhqS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yhqT1 T:1-119 SH3 SH3 SH3
e1yhqU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1yhqV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1yhqW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1yhqX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yhqY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1yhqZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1yhqD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yhqN1 D:X,Y,Z->N:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1yhqB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol