Domain ID e1yitD1

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  • A: a+b two layers
  • X: Ribosomal protein L5
  • H: Ribosomal protein L5
  • T: Ribosomal protein L5
  • F: Ribosomal_L5,Ribosomal_L5_C
UID: 000067634
Type: Automatic domain
Parent: e1iq4A1
Range: D:10-174
Ligands: NA
PDB: 1yit
PDB Description: 50S RIBOSOMAL PROTEIN L5P
UniProt: P14124
Hsap BLAST neighbor: P62913
Species: Haloarcula marismortui

Structure of domain e1yitD1

Domains in the same chain:

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e1yitD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5

Domains in the same PDB:

e1yit11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yit21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1yit31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yitA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1yitA2 A:91-237 SH3 SH3 SH3
e1yitB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1yitC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1yitD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1yitE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yitE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yitF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1yitG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1yitH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1yitI1 I:66-135 HTH HTH Ribosomal protein L11, C-terminal domain
e1yitJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1yitK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1yitL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yitM1 M:1-193 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yitN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1yitO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yitP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1yitP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1yitQ1 Q:1-95 SH3 SH3 SH3
e1yitR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1yitS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yitT1 T:1-119 SH3 SH3 SH3
e1yitU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1yitV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1yitW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1yitX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yitY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1yitZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1yitD1 of H-group "Ribosomal protein L5":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yitN1 D:X,Y,Z->N:x,y,z Ribonuclease H-like Interaction Interface Pymol
e1yitB1 D:x,y,z->B:-X+1/2,Y-1/2,-Z+1/2 RIFT-related Interaction Interface Pymol