Domain ID e1yj911

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Ribosomal_L37e
UID: 000088825
Type: Automatic domain
Parent: e1vqo11
Range: 1:1-56
Ligands: CD
PDB: 1yj9
PDB Description: 50S ribosomal protein L37e
UniProt: P32410
Hsap BLAST neighbor: P61927
Species: Haloarcula marismortui

Structure of domain e1yj911

Domains in the same chain:

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e1yj911 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e1yj911 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yj921 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1yj931 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yj9A1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1yj9A2 A:91-237 SH3 SH3 SH3
e1yj9B1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1yj9C1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1yj9D1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1yj9E1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yj9E2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yj9F1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1yj9G1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1yj9H1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1yj9I1 I:66-135 HTH HTH Ribosomal protein L11, C-terminal domain
e1yj9J1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1yj9K1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1yj9L1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yj9M1 M:1-193 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yj9N1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1yj9O1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yj9P1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1yj9P2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1yj9Q1 Q:1-95 SH3 SH3 SH3
e1yj9R1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1yj9S1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yj9T1 T:1-119 SH3 SH3 SH3
e1yj9U1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1yj9V1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1yj9W1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1yj9X1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yj9Y1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1yj9Z1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1yj911 of H-group "Rubredoxin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yj921 1:X,Y,Z->2:x,y,z Ribosomal protein L39e Interaction Interface Pymol
e1yj9C1 1:x,y,z->C:X,Y,Z Ribosomal protein L4 Interaction Interface Pymol