Domain ID e1yjwJ1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L13/L15p/L18e/L32e
  • H: Ribosomal protein L13 and L16-A
  • T: Ribosomal protein L13 and L16-A
  • F: Ribosomal_L13
UID: 000118739
Type: Automatic domain
Parent: e4v19N1
Range: J:9-145
Ligands: CL NA
PDB: 1yjw
PDB Description: 50S RIBOSOMAL PROTEIN L13P
UniProt: P29198
Hsap BLAST neighbor: P40429
Species: Haloarcula marismortui

Structure of domain e1yjwJ1

Domains in the same chain:

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e1yjwJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A

Domains in the same PDB:

e1yjw11 1:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yjw21 2:1-49 Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e
e1yjw31 3:1-92 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e1yjwA1 A:1-90 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1yjwA2 A:91-237 SH3 SH3 SH3
e1yjwB1 B:1-337 cradle loop barrel RIFT-related Alanine racemase-C
e1yjwC1 C:1-246 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e1yjwD1 D:10-174 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e1yjwE1 E:1-79 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yjwE2 E:80-172 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e1yjwF1 F:1-119 Bacillus chorismate mutase-like L30e-like L30e-like
e1yjwG1 G:12-29,G:63-73 Alpha-beta plaits Ribosomal protein L10-like Ribosomal protein L10-like
e1yjwH1 H:4-166 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal protein L10e
e1yjwI1 I:66-135 HTH HTH Ribosomal protein L11, C-terminal domain
e1yjwJ1 J:9-145 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e1yjwK1 K:1-132 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e1yjwL1 L:1-150 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yjwM1 M:1-193 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yjwN1 N:1-186 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1yjwO1 O:1-115 Ribosomal protein L13/L15p/L18e/L32e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e
e1yjwP1 P:1-54 Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain Ribosomal protein L19 (L19e) N-terminal domain
e1yjwP2 P:55-142 Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain Ribosomal protein L19 (L19e) C-terminal domain
e1yjwQ1 Q:1-95 SH3 SH3 SH3
e1yjwR1 R:1-150 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e1yjwS1 S:1-81 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e1yjwT1 T:1-119 SH3 SH3 SH3
e1yjwU1 U:4-56 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1yjwV1 V:1-65 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e1yjwW1 W:1-154 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e1yjwX1 X:7-88 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yjwY1 Y:95-236 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L32e Ribosomal protein L32e
e1yjwZ1 Z:10-82 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Structural contacts of domain e1yjwJ1 of H-group "Ribosomal protein L13 and L16-A":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yjwE1 J:x,y,z->E:X,Y,Z Ribosomal protein L6 Interaction Interface Pymol
e1yjwB1 J:x,y,z->B:X,Y,Z RIFT-related Interaction Interface Pymol