Domain ID e1ypnA3

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  • A: a/b three-layered sandwiches
  • X: Periplasmic binding protein-like II
  • H: Periplasmic binding protein-like II
  • T: Periplasmic binding protein-like II
  • F: Porphobil_deam
UID: 001523314
Type: Automatic domain
Parent: e1pdaA3
Range: A:103-198
Ligands: DPM
PDB: 1ypn
PDB Description: HYDROXYMETHYLBILANE SYNTHASE
UniProt: P06983
Hsap BLAST neighbor: P08397
Species: Escherichia coli

Structure of domain e1ypnA3

Structural contacts of domain e1ypnA3 of H-group "Periplasmic binding protein-like II":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ypnA2 A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 Periplasmic binding protein-like II Interaction Interface Pymol
e1ypnA1 A:-X+1/2,Y-1/2,-Z+1->A:x,y,z Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain Interaction Interface Pymol