Domain ID e1yrqB1

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  • A: few secondary structure elements
  • X: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • H: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • T: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
  • F: NiFe_hyd_SSU_C
UID: 000281287
Type: Automatic domain
Parent: e1ublS1
Range: B:177-264
Ligands: F3S SF4
PDB: 1yrq
PDB Description: Periplasmic [NiFe] hydrogenase small subunit
UniProt: P18187
Species: Desulfovibrio fructosivorans

Structure of domain e1yrqB1

Domains in the same chain:

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e1yrqB2 B:3-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqB1 B:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit

Domains in the same PDB:

e1yrqA2 A:3-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqA1 A:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqB2 B:3-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqB1 B:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqC2 C:5-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqC1 C:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqD2 D:3-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqD1 D:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqF2 F:5-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqF1 F:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqG2 G:3-176 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e1yrqG1 G:177-264 Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit
e1yrqH5 H:5-50,H:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqH6 H:51-94,H:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqH8 H:94-328,H:375-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqH7 H:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yrqI5 I:5-50,I:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqI6 I:51-94,I:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqI8 I:94-328,I:375-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqI7 I:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yrqJ5 J:6-50,J:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqJ6 J:51-94,J:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqJ8 J:94-341,J:377-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqJ7 J:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yrqK5 K:6-50,K:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqK6 K:51-94,K:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqK8 K:94-341,K:377-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqK7 K:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yrqM5 M:5-50,M:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqM6 M:51-94,M:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqM8 M:94-328,M:375-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqM7 M:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit
e1yrqN5 N:5-50,N:513-549 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqN6 N:51-94,N:461-512 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e1yrqN8 N:94-328,N:375-460 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e1yrqN7 N:328-379 all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit all-beta domain in nickel-iron hydrogenase large subunit

Structural contacts of domain e1yrqB1 of H-group "Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yrqI6 B:X,Y,Z->I:x,y,z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1yrqI8 B:X,Y,Z->I:x,y,z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol
e1yrqJ5 B:x,y,z->J:-X+1,Y-1/2,-Z Ni-Fe binding domain in nickel-iron hydrogenase large subunit Interaction Interface Pymol
e1yrqJ8 B:x,y,z->J:-X+1,Y-1/2,-Z alpha-helical domain in nickel-iron hydrogenase, large subunit Interaction Interface Pymol