| UID: | 000281292 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1ublS3 |
| Range: | D:3-176 |
| Ligands: | SF4 |
| PDB: | 1yrq |
| PDB Description: | Periplasmic [NiFe] hydrogenase small subunit |
| UniProt: | P18187 |
| Species: | Desulfovibrio fructosivorans |
Structure of domain e1yrqD2
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e1yrqD2 of H-group "Class I glutamine amidotransferase-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e1yrqK6 | D:X,Y,Z->K:x,y,z | Ni-Fe binding domain in nickel-iron hydrogenase large subunit | Interaction Interface Pymol |
| e1yrqK7 | D:X,Y,Z->K:x,y,z | all-beta domain in nickel-iron hydrogenase large subunit | Interaction Interface Pymol |
| e1yrqK8 | D:X,Y,Z->K:x,y,z | alpha-helical domain in nickel-iron hydrogenase, large subunit | Interaction Interface Pymol |
| e1yrqK5 | D:X,Y,Z->K:x,y,z | Ni-Fe binding domain in nickel-iron hydrogenase large subunit | Interaction Interface Pymol |
| e1yrqH8 | D:-X+1,Y-1/2,-Z+1->H:x,y,z | alpha-helical domain in nickel-iron hydrogenase, large subunit | Interaction Interface Pymol |
| e1yrqH6 | D:-X+1,Y-1/2,-Z+1->H:x,y,z | Ni-Fe binding domain in nickel-iron hydrogenase large subunit | Interaction Interface Pymol |
| e1yrqH7 | D:-X+1,Y-1/2,-Z+1->H:x,y,z | all-beta domain in nickel-iron hydrogenase large subunit | Interaction Interface Pymol |
| e1yrqF1 | D:X,Y,Z->F:x,y,z | Fe-S cluster-binding domain in nickel-iron hydrogenase small subunit | Interaction Interface Pymol |
