ECOD: domain e1yt3A2

Domain ID e1yt3A2

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RNAseD_HRDC_C

UID:	000002981
Type:	Manual and representative domain
Range:	A:295-375
Ligands:	SO4
PDB:	1yt3
PDB Description:	Ribonuclease D
UniProt:	P09155
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e1yt3A3	A:1-193	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1yt3A1	A:194-294	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1yt3A2	A:295-375	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e1yt3A3	A:1-193	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1yt3A1	A:194-294	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1yt3A2	A:295-375	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e1yt3A2 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1yt3A1	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A3	A:x,y,z->A:-X+3/2,-Y+1,Z-1/2	Ribonuclease H-like	Interaction Interface Pymol
e1yt3A1	A:-X+3/2,-Y+1,Z-1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A3	A:-X+1,Y-1/2,-Z+3/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol