ECOD: domain e1yt3A3

Domain ID e1yt3A3

A: mixed a+b and a/b
X: Ribonuclease H-like
H: Ribonuclease H-like
T: Ribonuclease H-like
F: DNA_pol_A_exo1

UID:	000011153
Type:	Manual and representative domain
Range:	A:1-193
Ligands:	SO4 ZN
PDB:	1yt3
PDB Description:	Ribonuclease D
UniProt:	P09155
Hsap BLAST neighbor:	Q01780
Species:	Escherichia coli

Domains in the same chain:

Download Pymol

e1yt3A3	A:1-193	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1yt3A1	A:194-294	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1yt3A2	A:295-375	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e1yt3A3	A:1-193	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e1yt3A1	A:194-294	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e1yt3A2	A:295-375	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e1yt3A3 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1yt3A1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A1	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A1	A:-X+3/2,-Y+1,Z-1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A2	A:-X+3/2,-Y+1,Z-1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A3	A:x,y,z->A:-X+1,Y-1/2,-Z+3/2	Ribonuclease H-like	Interaction Interface Pymol
e1yt3A2	A:x,y,z->A:-X+1,Y-1/2,-Z+3/2	SAM/DNA-glycosylase	Interaction Interface Pymol
e1yt3A3	A:-X+1,Y-1/2,-Z+3/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol