Domain ID e1yymG2

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  • A: a+b two layers
  • X: Ribosomal protein L31e-like
  • H: Ribosomal protein L31e/gp120 outer domain
  • T: Ribosomal protein L31e/gp120 outer domain
  • F: GP120
UID: 001829840
Type: Automatic domain
Parent: e2nxyA2
Range: G:256-473
Ligands: EDO IPA NAG
PDB: 1yym
PDB Description: Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120)
UniProt: P35961
Species: Human immunodeficiency virus 1

Structure of domain e1yymG2

Domains in the same chain:

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e1yymG1 G:83-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yymG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain

Domains in the same PDB:

e1yymG1 G:83-255,G:474-492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yymG2 G:256-473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yymH1 H:1-113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymH2 H:114-214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymL1 L:1-107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymL2 L:108-212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymM1 M:1-27 omega toxin-like omega toxin-related Scorpion toxin-like
e1yymP1 P:1083-1255,P:1474-1492 gp120 inner domain gp120 inner domain gp120 inner domain
e1yymP2 P:1256-1473 Ribosomal protein L31e-like Ribosomal protein L31e/gp120 outer domain Ribosomal protein L31e/gp120 outer domain
e1yymQ1 Q:1001-1107 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymQ2 Q:1108-1212 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymR1 R:1001-1113 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymR2 R:1114-1214 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e1yymS1 S:1001-1027 omega toxin-like omega toxin-related Scorpion toxin-like

Structural contacts of domain e1yymG2 of H-group "Ribosomal protein L31e/gp120 outer domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1yymH1 G:X,Y,Z->H:x,y,z Immunoglobulin-related Interaction Interface Pymol
e1yymG1 G:x,y,z->G:X-1,Y,Z gp120 inner domain Interaction Interface Pymol