ECOD: domain e1zm4C4

Domain ID e1zm4C4

A: a+b two layers
X: Ribosomal protein S5 domain 2-like
H: Ribosomal protein S5 domain 2-like
T: Ribosomal protein S5 domain 2-like
F: EFG_IV

UID:	000071129
Type:	Automatic domain
Parent:	e2dy1A4
Range:	C:561-725
Ligands:	TAD
PDB:	1zm4
PDB Description:	ELONGATION FACTOR 2
UniProt:	P32324
Hsap BLAST neighbor:	P13639
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e1zm4C4

Domains in the same chain:

Download Pymol

Domains in the same PDB:

e1zm4A5	A:3-343	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1zm4A1	A:344-481	cradle loop barrel	RIFT-related	Alanine racemase-C
e1zm4A2	A:482-560	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4A4	A:561-725	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e1zm4A3	A:726-842	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4B1	B:399-602	ADP-ribosylation	ADP-ribosylation	ADP-ribosylation
e1zm4C5	C:3-343	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1zm4C1	C:344-481	cradle loop barrel	RIFT-related	Alanine racemase-C
e1zm4C2	C:482-560	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4C4	C:561-725	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e1zm4C3	C:726-842	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4D1	D:399-602	ADP-ribosylation	ADP-ribosylation	ADP-ribosylation
e1zm4E5	E:3-343	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e1zm4E1	E:344-481	cradle loop barrel	RIFT-related	Alanine racemase-C
e1zm4E2	E:482-560	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4E4	E:561-725	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e1zm4E3	E:726-842	Alpha-beta plaits	EF-G C-terminal domain-like	EF-G C-terminal domain-like
e1zm4F1	F:399-602	ADP-ribosylation	ADP-ribosylation	ADP-ribosylation

Structural contacts of domain e1zm4C4 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e1zm4D1	C:X,Y,Z->D:x,y,z	ADP-ribosylation	Interaction Interface Pymol
e1zm4D1	C:x,y,z->D:-X+1/2,Y-1/2,-Z+1	ADP-ribosylation	Interaction Interface Pymol
e1zm4B1	C:X,Y,Z->B:x,y,z	ADP-ribosylation	Interaction Interface Pymol
e1zm4E4	C:-X,Y-1,-Z+1->E:x,y,z	Ribosomal protein S5 domain 2-like	Interaction Interface Pymol