Domain ID e2ag1D3

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_N
UID: 000293928
Type: Automatic domain
Parent: e1pvdA2
Range: D:3-185
Ligands: TPP
PDB: 2ag1
PDB Description: benzaldehyde lyase
UniProt: Q9F4L3
Hsap BLAST neighbor: A1L0T0
Species: Pseudomonas fluorescens

Structure of domain e2ag1D3

Domains in the same chain:

e2ag1D3 D:3-185 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1D1 D:186-367 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2ag1D2 D:368-555 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e2ag1A3 A:3-185 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1A1 A:186-367 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2ag1A2 A:368-555 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1B3 B:3-185 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1B1 B:186-367 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2ag1B2 B:368-555 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1C3 C:3-185 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1C1 C:186-367 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2ag1C2 C:368-555 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1D3 D:3-185 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2ag1D1 D:186-367 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2ag1D2 D:368-555 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e2ag1D3 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ag1C3 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2ag1C2 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2ag1C1 D:x,y,z->C:X,Y,Z Rossmann-related Interaction Interface Pymol
e2ag1A1 D:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e2ag1B3 D:x,y,z->B:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol