Domain ID e2am2A2

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  • A: a/b three-layered sandwiches
  • X: MurD-like peptide ligases, peptide-binding domain
  • H: MurD-like peptide ligases, peptide-binding domain
  • T: MurD-like peptide ligases, peptide-binding domain
  • F: Mur_ligase_C
UID: 000293959
Type: Automatic domain
Parent: e1e8cA2
Range: A:297-454
Ligands: 2LG
PDB: 2am2
PDB Description: UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase, MurF protein
UniProt: Q8DNV6
Species:

Structure of domain e2am2A2

Structural contacts of domain e2am2A2 of H-group "MurD-like peptide ligases, peptide-binding domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2am2A1 A:x,y,z->A:Y,X,-Z+1/3 P-loop domains-related Interaction Interface Pymol
e2am2A2 A:x,y,z->A:Y,X,-Z+1/3 MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2am2A2 A:Y,X,-Z+1/3->A:x,y,z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2am2A1 A:Y,X,-Z+1/3->A:x,y,z P-loop domains-related Interaction Interface Pymol
e2am2A3 A:x,y,z->A:-Y+1,-X+1,-Z+5/6 MurF and HprK N-domain-like Interaction Interface Pymol
e2am2A2 A:x,y,z->A:-Y+1,-X+1,-Z+5/6 MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2am2A2 A:-Y+1,-X+1,-Z+5/6->A:x,y,z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2am2A3 A:-Y+1,-X+1,-Z+5/6->A:x,y,z MurF and HprK N-domain-like Interaction Interface Pymol
e2am2A1 A:-X+1,-X+Y,-Z+2/3->A:x,y,z P-loop domains-related Interaction Interface Pymol
e2am2A1 A:x,y,z->A:X-Y,X,Z+1/6 P-loop domains-related Interaction Interface Pymol