| UID: | 000005394 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:17-246 |
| Ligands: | K |
| PDB: | 2apo |
| PDB Description: | PROBABLE TRNA PSEUDOURIDINE SYNTHASE B |
| UniProt: | Q57612 |
| Hsap BLAST neighbor: | O60832 |
| Species: | Methanocaldococcus jannaschii |
Structure of domain e2apoA2
Domains in the same chain:
| e2apoA2 | A:17-246 | Alpha-beta plaits | Pseudouridine synthase | Pseudouridine synthase |
| e2apoA1 | A:247-331 | cradle loop barrel | RIFT-related | PUA domain |
Domains in the same PDB:
Structural contacts of domain e2apoA2 of H-group "Pseudouridine synthase":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2apoB1 | A:X,Y,Z->B:x,y,z | Nucleolar RNA-binding protein Nop10-like | Interaction Interface Pymol |
| e2apoA2 | A:x,y,z->A:-X+1/2,Y-1/2,-Z+2 | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoA1 | A:-X+1/2,Y-1/2,-Z+2->A:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2apoA2 | A:-X+1/2,Y-1/2,-Z+2->A:x,y,z | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoA2 | A:x,y,z->A:-X,Y,-Z+2 | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoA2 | A:-X,Y,-Z+2->A:x,y,z | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoA1 | A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 | RIFT-related | Interaction Interface Pymol |
| e2apoA2 | A:x,y,z->A:-X+1/2,Y-1/2,-Z+1 | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoA2 | A:-X+1/2,Y-1/2,-Z+1->A:x,y,z | Pseudouridine synthase | Interaction Interface Pymol |
| e2apoB1 | A:-X+1/2,Y-1/2,-Z+1->B:x,y,z | Nucleolar RNA-binding protein Nop10-like | Interaction Interface Pymol |
| e2apoB1 | A:-X,Y,-Z+2->B:x,y,z | Nucleolar RNA-binding protein Nop10-like | Interaction Interface Pymol |
