Domain ID e2avyL1

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  • A: beta barrels
  • X: OB-fold
  • H: Nucleic acid-binding proteins
  • T: Nucleic acid-binding proteins
  • F: Ribosom_S12_S23
UID: 000023948
Type: Automatic domain
Parent: e2uubL1
Range: L:1-118
PDB: 2avy
PDB Description:
Hsap BLAST neighbor: O15235
Species:

Structure of domain e2avyL1

Domains in the same chain:

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e2avyL1 L:1-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins

Domains in the same PDB:

e2avyC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2avyC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2avyE1 E:9-76 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2avyE2 E:78-147 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2avyF1 F:1-100 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2avyG1 G:11-146 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2avyH1 H:3-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2avyH2 H:66-128 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2avyJ1 J:5-102 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2avyK1 K:12-128 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2avyL1 L:1-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2avyN1 N:1-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2avyO1 O:2-86 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2avyP1 P:1-78 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2avyR1 R:19-73 HTH HTH tri-helical
e2avyT1 T:4-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2avyL1 of H-group "Nucleic acid-binding proteins":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2avyH2 L:x,y,z->H:X,Y,Z Ribosomal protein S8, C-terminal domain Interaction Interface Pymol