ECOD: domain e2b8kG2

Domain ID e2b8kG2

A: a+b two layers
X: Dodecin subunit-like
H: Flavin-binding protein dodecin-like
T: Flavin-binding protein dodecin-like
F: SHS2_Rpb7-N

UID:	000068184
Type:	Automatic domain
Parent:	e1go3E2
Range:	G:1-80
PDB:	2b8k
PDB Description:	DNA-DIRECTED RNA POLYMERASE II 19 KDA POLYPEPTIDE
UniProt:	P34087
Hsap BLAST neighbor:	P62487
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e2b8kG2	G:1-80	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2b8kG1	G:81-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

Structural contacts of domain e2b8kG2 of H-group "Flavin-binding protein dodecin-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2b8kD1	G:x,y,z->D:X,Y,Z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2b8kA1	G:x,y,z->A:X,Y,Z	central helical domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol
e2b8kA5	G:x,y,z->A:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2b8kF1	G:x,y,z->F:X,Y,Z	RPB6/omega subunit-like	Interaction Interface Pymol
e2b8kB1	G:x,y,z->B:X,Y,Z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol

e2b8kA4	A:2-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2b8kA5	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e2b8kA2	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2b8kA9	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2b8kA3	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2b8kA7	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e2b8kA1	A:1060-1102,A:1301-1455	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2b8kA6	A:1103-1131,A:1243-1300	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2b8kA8	A:1132-1242	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2b8kB2	B:20-70,B:90-134,B:164-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2b8kB4	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2b8kB6	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e2b8kB3	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2b8kB7	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e2b8kB5	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2b8kB1	B:1098-1224	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2b8kC1	C:3-37,C:173-268	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2b8kC2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2b8kD1	D:4-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2b8kE2	E:5-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e2b8kE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e2b8kF1	F:72-155	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e2b8kG2	G:1-80	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2b8kG1	G:81-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2b8kH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2b8kI1	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2b8kI2	I:50-120	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e2b8kJ1	J:1-65	HTH	RPB10	RPB10
e2b8kK1	K:1-114	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2b8kL1	L:25-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related