Domain ID e2ba0I4

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001157669
Type: Automatic domain
Parent: e2nn6A2
Range: I:3-177
PDB: 2ba0
PDB Description: Archaeal exosome RNA binding protein RRP42
UniProt: O29756
Hsap BLAST neighbor: Q96B26
Species: Archaeoglobus fulgidus

Structure of domain e2ba0I4

Domains in the same chain:

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e2ba0I4 I:3-177 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0I3 I:178-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e2ba0A3 A:2-52 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba0A1 A:53-135 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba0A2 A:136-219 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2ba0B3 B:2-52 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba0B1 B:53-135 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba0B2 B:136-219 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2ba0C3 C:2-52 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2ba0C1 C:53-135 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2ba0C2 C:136-219 Alpha-lytic protease prodomain-like KH-domains Eukaryotic type KH-domain (KH-domain type I)
e2ba0D2 D:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0D1 D:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba0E2 E:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0E1 E:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba0F2 F:10-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0F1 F:154-242 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba0G2 G:3-178 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0G1 G:179-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba0H2 H:3-178 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0H1 H:179-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2ba0I4 I:3-177 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2ba0I3 I:178-257 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e2ba0I4 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ba0F1 I:x,y,z->F:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e2ba0F2 I:x,y,z->F:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2ba0D2 I:x,y,z->D:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2ba0A1 I:x,y,z->A:X,Y,Z Nucleic acid-binding proteins Interaction Interface Pymol
e2ba0A2 I:x,y,z->A:X,Y,Z KH-domains Interaction Interface Pymol
e2ba0A3 I:x,y,z->A:-X+1,Y-1/2,-Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2ba0E2 I:x,y,z->E:X-1,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol