ECOD: domain e2be5D9

Domain ID e2be5D9

A: alpha arrays
X: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
H: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
T: inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
F: Unmapped domains

UID:	001826479
Type:	Automatic domain
Parent:	e2a69D5
Range:	D:654-696
PDB:	2be5
PDB Description:	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN
UniProt:	Q8RQE8
Species:	Thermus thermophilus

Domains in the same chain:

Download Pymol

e2be5D10	D:2-165,D:449-610	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2be5D4	D:166-217,D:364-394	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5D8	D:395-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5D6	D:611-653,D:697-777	cradle loop barrel	RIFT-related	double psi
e2be5D9	D:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e2be5D7	D:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2be5D1	D:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2be5D2	D:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2be5D3	D:1201-1269,D:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2be5D5	D:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif

Domains in the same PDB:

Structural contacts of domain e2be5D9 of H-group "inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2be5C7	D:x,y,z->C:X,Y,Z	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	Interaction Interface Pymol
e2be5C8	D:x,y,z->C:X,Y,Z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e2be5F2	D:X,Y,Z->F:x,y,z	HTH	Interaction Interface Pymol
e2be5E1	D:X,Y,Z->E:x,y,z	RPB6/omega subunit-like	Interaction Interface Pymol
e2be5B1	D:x,y,z->B:X,Y,Z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol

e2be5A1	A:1-49,A:173-227	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2be5A2	A:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2be5B1	B:1-49,B:173-227	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2be5B2	B:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2be5C4	C:1-141,C:331-456	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2be5C5	C:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2be5C6	C:458-591	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2be5C2	C:592-662	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5C9	C:664-700,C:827-999	cradle loop barrel	RIFT-related	double psi
e2be5C8	C:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5C7	C:999-1118	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2be5D10	D:2-165,D:449-610	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2be5D4	D:166-217,D:364-394	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5D8	D:395-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5D6	D:611-653,D:697-777	cradle loop barrel	RIFT-related	double psi
e2be5D9	D:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e2be5D7	D:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2be5D1	D:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2be5D2	D:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2be5D3	D:1201-1269,D:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2be5D5	D:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5E1	E:2-96	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e2be5F3	F:78-257	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e2be5F1	F:258-317	HTH	HTH	tri-helical
e2be5F2	F:319-423	HTH	HTH	tri-helical
e2be5K1	K:1-49,K:173-227	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2be5K2	K:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2be5L1	L:1-49,L:173-227	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e2be5L2	L:50-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e2be5M4	M:1-141,M:331-456	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2be5M5	M:142-330	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e2be5M6	M:458-591	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e2be5M2	M:592-662	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5M9	M:664-700,M:827-999	cradle loop barrel	RIFT-related	double psi
e2be5M8	M:699-832	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5M7	M:999-1118	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2be5N4	N:2-165,N:449-610	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e2be5N5	N:166-217,N:364-394	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5N2	N:395-448	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5N8	N:611-653,N:697-777	cradle loop barrel	RIFT-related	double psi
e2be5N3	N:654-696	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit	inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit
e2be5N6	N:778-948	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e2be5N7	N:949-1109	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e2be5N1	N:1110-1200	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e2be5N10	N:1201-1269,N:1331-1505	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e2be5N9	N:1270-1330	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e2be5O1	O:2-96	RPB6/omega subunit-like	RPB6/omega subunit-like	RNA polymerase omega subunit
e2be5P3	P:78-257	Sigma2 domain-like	Sigma2 domain of RNA polymerase sigma factors	Sigma2 domain of RNA polymerase sigma factors
e2be5P1	P:258-317	HTH	HTH	tri-helical
e2be5P2	P:319-423	HTH	HTH	tri-helical