Domain ID e2c3yB1

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  • A: a+b two layers
  • X: 4Fe-4S ferredoxin
  • H: 4Fe-4S ferredoxin
  • T: 4Fe-4S ferredoxin
  • F: Fer4
UID: 000067048
Type: Automatic domain
Parent: e1jb0C1
Range: B:669-785
Ligands: SF4
PDB: 2c3y
PDB Description: PYRUVATE-FERREDOXIN OXIDOREDUCTASE
UniProt: P94692
Species: Desulfovibrio africanus

Structure of domain e2c3yB1

Domains in the same chain:

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e2c3yB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yB5 B:786-882,B:955-1231 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2c3yA4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yA3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yA1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yA6 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA5 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2c3yB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yB5 B:786-882,B:955-1231 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2c3yB1 of H-group "4Fe-4S ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2c3yA6 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c3yA2 B:-X-1,Y-1/2,-Z+1/2->A:x,y,z TK C-terminal domain-like Interaction Interface Pymol
e2c3yA1 B:x,y,z->A:X-1/2,-Y-1/2,-Z 4Fe-4S ferredoxin Interaction Interface Pymol