ECOD: domain e2c3yB5

Domain ID e2c3yB5

A: a/b three-layered sandwiches
X: Thiamin diphosphate-binding fold (THDP-binding)
H: Thiamin diphosphate-binding fold (THDP-binding)
T: Thiamin diphosphate-binding fold (THDP-binding)
F: TPP_enzyme_C

UID:	001872909
Type:	Automatic domain
Parent:	e2c42A7
Range:	B:786-882,B:955-1231
Ligands:	CA CO2 HTL MG SF4
PDB:	2c3y
PDB Description:	PYRUVATE-FERREDOXIN OXIDOREDUCTASE
UniProt:	P94692
Species:	Desulfovibrio africanus

Domains in the same chain:

Download Pymol

e2c3yB4	B:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2	B:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c3yB3	B:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1	B:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c3yB5	B:786-882,B:955-1231	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6	B:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2c3yA4	A:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA2	A:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c3yA3	A:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yA1	A:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c3yA6	A:786-882,A:955-1232	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA5	A:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2c3yB4	B:2-258	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2	B:259-415	TK C-terminal domain-like	TK C-terminal domain-like	TK C-terminal domain-like
e2c3yB3	B:416-668	P-loop domains-like	P-loop domains-related	Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1	B:669-785	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2c3yB5	B:786-882,B:955-1231	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6	B:883-954	Bromodomain-like	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase	Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2c3yB5 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2c3yA6	B:x,y,z->A:X,Y,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2c3yA4	B:x,y,z->A:X,Y,Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2c3yA3	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e2c3yA1	B:x,y,z->A:X,Y,Z	4Fe-4S ferredoxin	Interaction Interface Pymol
e2c3yB5	B:x,y,z->B:X-1/2,-Y-1/2,-Z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol
e2c3yB5	B:X-1/2,-Y-1/2,-Z->B:x,y,z	Thiamin diphosphate-binding fold (THDP-binding)	Interaction Interface Pymol