Domain ID e2c3yB5

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_C
UID: 001872909
Type: Automatic domain
Parent: e2c42A7
Range: B:786-882,B:955-1231
Ligands: CA CO2 HTL MG SF4
PDB: 2c3y
PDB Description: PYRUVATE-FERREDOXIN OXIDOREDUCTASE
UniProt: P94692
Species: Desulfovibrio africanus

Structure of domain e2c3yB5

Domains in the same chain:

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e2c3yB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yB5 B:786-882,B:955-1231 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2c3yA4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yA3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yA1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yA6 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yA5 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2c3yB4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c3yB3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c3yB1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c3yB5 B:786-882,B:955-1231 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c3yB6 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2c3yB5 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2c3yA6 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c3yA4 B:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c3yA3 B:x,y,z->A:X,Y,Z P-loop domains-related Interaction Interface Pymol
e2c3yA1 B:x,y,z->A:X,Y,Z 4Fe-4S ferredoxin Interaction Interface Pymol
e2c3yB5 B:x,y,z->B:X-1/2,-Y-1/2,-Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c3yB5 B:X-1/2,-Y-1/2,-Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol