Domain ID e2c42A4

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: POR_N
UID: 000010689
Type: Manual and representative domain
Range: A:2-258
Ligands: PYR TPP
PDB: 2c42
PDB Description: PYRUVATE-FERREDOXIN OXIDOREDUCTASE
UniProt: P94692
Species: Desulfovibrio africanus

Structure of domain e2c42A4

Domains in the same chain:

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e2c42A4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42A2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c42A3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42A1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c42A7 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42A6 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Domains in the same PDB:

e2c42A4 A:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42A2 A:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c42A3 A:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42A1 A:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c42A7 A:786-882,A:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42A6 A:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase
e2c42B4 B:2-258 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42B2 B:259-415 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2c42B3 B:416-668 P-loop domains-like P-loop domains-related Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
e2c42B1 B:669-785 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2c42B6 B:786-882,B:955-1232 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2c42B5 B:883-954 Bromodomain-like Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase

Structural contacts of domain e2c42A4 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2c42B4 A:X,Y,Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c42B6 A:X,Y,Z->B:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2c42B2 A:X,Y,Z->B:x,y,z TK C-terminal domain-like Interaction Interface Pymol
e2c42B3 A:X,Y,Z->B:x,y,z P-loop domains-related Interaction Interface Pymol
e2c42B5 A:X,Y,Z->B:x,y,z Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Interaction Interface Pymol
e2c42A6 A:x,y,z->A:X-1,Y,Z Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase Interaction Interface Pymol