ECOD: domain e2ckzC1

Domain ID e2ckzC1

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: RNA_pol_Rpb4

UID:	000185822
Type:	Manual and representative domain
Range:	C:1-160
PDB:	2ckz
PDB Description:	DNA-DIRECTED RNA POLYMERASE III 18 KD POLYPEPTIDE
UniProt:	P47076
Hsap BLAST neighbor:	O75575
Species:	Saccharomyces cerevisiae

Domains in the same chain:

Download Pymol

e2ckzC1	C:1-160	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

Structural contacts of domain e2ckzC1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ckzD2	C:x,y,z->D:X,Y,Z	Flavin-binding protein dodecin-like	Interaction Interface Pymol
e2ckzD3	C:x,y,z->D:X,Y,Z	Nucleic acid-binding proteins	Interaction Interface Pymol
e2ckzB2	C:x,y,z->B:-Y,X-Y+1,Z+1/3	Nucleic acid-binding proteins	Interaction Interface Pymol
e2ckzC1	C:x,y,z->C:X,X-Y+1,-Z+1/6	SAM/DNA-glycosylase	Interaction Interface Pymol
e2ckzC1	C:X,X-Y+1,-Z+1/6->C:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2ckzB3	C:x,y,z->B:X,X-Y+1,-Z+1/6	Flavin-binding protein dodecin-like	Interaction Interface Pymol

e2ckzB3	B:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2ckzB2	B:79-158,B:190-213	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2ckzC1	C:1-160	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2ckzD2	D:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2ckzD3	D:79-158,D:191-217	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins