ECOD: domain e2csdA2

Domain ID e2csdA2

A: alpha arrays
X: HhH/H2TH
H: SAM/DNA-glycosylase
T: SAM domain-like
F: Topo-V_HhH_2_2nd

UID:	000294610
Type:	Automatic domain
Parent:	e2csbA2
Range:	A:351-409
PDB:	2csd
PDB Description:	Topoisomerase V
UniProt:	Q977W1
Species:	Methanopyrus kandleri

Domain
In chain context
In PDB context

Structure of domain e2csdA2

Domains in the same chain:

Download Pymol

e2csdA6	A:3-179,A:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csdA1	A:180-237	HTH	HTH	tri-helical
e2csdA3	A:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA2	A:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA4	A:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA5	A:465-518	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Domains in the same PDB:

e2csdA6	A:3-179,A:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csdA1	A:180-237	HTH	HTH	tri-helical
e2csdA3	A:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA2	A:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA4	A:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdA5	A:465-518	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdB6	B:3-179,B:238-293	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like	Topoisomerase V catalytic domain-like
e2csdB1	B:180-237	HTH	HTH	tri-helical
e2csdB3	B:294-350	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdB2	B:351-409	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdB4	B:410-464	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2csdB5	B:465-518	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e2csdA2 of H-group "SAM/DNA-glycosylase":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2csdA4	A:X-1/2,-Y+1/2,-Z+3->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2csdB3	A:x,y,z->B:X-1/2,-Y-1/2,-Z+3	SAM/DNA-glycosylase	Interaction Interface Pymol