| UID: | 000294617 |
|---|---|
| Type: | Automatic domain |
| Parent: | e2csbA3 |
| Range: | B:294-350 |
| PDB: | 2csd |
| PDB Description: | Topoisomerase V |
| UniProt: | Q977W1 |
| Species: | Methanopyrus kandleri |
Structure of domain e2csdB3
Domains in the same chain:
| e2csdB6 | B:3-179,B:238-293 | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like |
| e2csdB1 | B:180-237 | HTH | HTH | tri-helical |
| e2csdB3 | B:294-350 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB2 | B:351-409 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB4 | B:410-464 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB5 | B:465-518 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Domains in the same PDB:
| e2csdA6 | A:3-179,A:238-293 | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like |
| e2csdA1 | A:180-237 | HTH | HTH | tri-helical |
| e2csdA3 | A:294-350 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdA2 | A:351-409 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdA4 | A:410-464 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdA5 | A:465-518 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB6 | B:3-179,B:238-293 | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like | Topoisomerase V catalytic domain-like |
| e2csdB1 | B:180-237 | HTH | HTH | tri-helical |
| e2csdB3 | B:294-350 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB2 | B:351-409 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB4 | B:410-464 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
| e2csdB5 | B:465-518 | HhH/H2TH | SAM/DNA-glycosylase | SAM domain-like |
Structural contacts of domain e2csdB3 of H-group "SAM/DNA-glycosylase":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2csdA6 | B:x,y,z->A:X,Y-1,Z | Topoisomerase V catalytic domain-like | Interaction Interface Pymol |
| e2csdA3 | B:x,y,z->A:X,Y-1,Z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e2csdB2 | B:x,y,z->B:X-1/2,-Y-1/2,-Z+3 | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e2csdA2 | B:X-1/2,-Y-1/2,-Z+3->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
| e2csdA4 | B:X-1/2,-Y-1/2,-Z+3->A:x,y,z | SAM/DNA-glycosylase | Interaction Interface Pymol |
