ECOD: domain e2derB2

Domain ID e2derB2

A: a/b three-layered sandwiches
X: HUP domain-like
H: HUP domains
T: HUP domains
F: tRNA_Me_trans

UID:	001172128
Type:	Automatic and representative domain
Range:	B:4-205
Ligands:	PO4 SO4
PDB:	2der
PDB Description:	TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
UniProt:	P25745
Hsap BLAST neighbor:	O75648
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e2derB2

Domains in the same chain:

Download Pymol

e2derB2	B:4-205	HUP domain-like	HUP domains	HUP domains
e2derB5	B:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2derB6	B:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e2derA2	A:5-188	HUP domain-like	HUP domains	HUP domains
e2derA1	A:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2derA3	A:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e2derB2	B:4-205	HUP domain-like	HUP domains	HUP domains
e2derB5	B:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2derB6	B:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Structural contacts of domain e2derB2 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2derA2	B:X,Y,Z-1->A:x,y,z	HUP domains	Interaction Interface Pymol
e2derB2	B:x,y,z->B:-X,Y,-Z-1	HUP domains	Interaction Interface Pymol
e2derB2	B:-X,Y,-Z-1->B:x,y,z	HUP domains	Interaction Interface Pymol