ECOD: domain e2deuB4

Domain ID e2deuB4

A: a/b three-layered sandwiches
X: HUP domain-like
H: HUP domains
T: HUP domains
F: tRNA_Me_trans

UID:	001250476
Type:	Automatic domain
Parent:	e2derA2
Range:	B:5-205
Ligands:	AMP SO4
PDB:	2deu
PDB Description:	TRNA-SPECIFIC 2-THIOURIDYLASE MNMA
UniProt:	P25745
Hsap BLAST neighbor:	O75648
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e2deuB4

Domains in the same chain:

Download Pymol

e2deuB4	B:5-205	HUP domain-like	HUP domains	HUP domains
e2deuB5	B:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2deuB6	B:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Domains in the same PDB:

e2deuA4	A:5-205	HUP domain-like	HUP domains	HUP domains
e2deuA5	A:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2deuA6	A:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain
e2deuB4	B:5-205	HUP domain-like	HUP domains	HUP domains
e2deuB5	B:206-282	SH3	PRC-barrel domain	PRC-barrel domain
e2deuB6	B:283-368	cradle loop barrel	RIFT-related	Aminomethyltransferase beta-barrel domain

Structural contacts of domain e2deuB4 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2deuA4	B:x,y,z->A:-X+1/2,Y-1/2,-Z	HUP domains	Interaction Interface Pymol