ECOD: domain e2f00B4

Domain ID e2f00B4

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Mur_ligase_M

UID:	001254259
Type:	Automatic domain
Parent:	e1j6uA2
Range:	B:108-322
Ligands:	MG
PDB:	2f00
PDB Description:	UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE
UniProt:	P17952
Species:	Escherichia coli

Domain
In chain context
In PDB context

Structure of domain e2f00B4

Domains in the same chain:

Download Pymol

e2f00B6	B:1-107	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2f00B4	B:108-322	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2f00B5	B:323-483	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2f00A6	A:1-107	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2f00A4	A:108-322	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2f00A5	A:323-483	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain
e2f00B6	B:1-107	Rossmann-like	Rossmann-related	MurCD/PglD N-terminal domain-like
e2f00B4	B:108-322	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2f00B5	B:323-483	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain	MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2f00B4 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2f00A6	B:x,y,z->A:X,Y,Z	Rossmann-related	Interaction Interface Pymol
e2f00A4	B:x,y,z->A:X,Y,Z	P-loop domains-related	Interaction Interface Pymol
e2f00A6	B:X-1/2,-Y-1/2,-Z->A:x,y,z	Rossmann-related	Interaction Interface Pymol
e2f00A5	B:x,y,z->A:X,Y-1,Z	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol
e2f00A5	B:x,y,z->A:-X,Y-1/2,-Z+1/2	MurD-like peptide ligases, peptide-binding domain	Interaction Interface Pymol