Domain ID e2f4vM1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: H2TH
  • T: H2TH
  • F: Ribosomal_S13
UID: 001552393
Type: Automatic domain
Parent: e4v4vAM1
Range: M:2-126
Ligands: MG
PDB: 2f4v
PDB Description: 30S RIBOSOMAL PROTEIN S13
UniProt: P80377
Hsap BLAST neighbor: P62269
Species: Thermus thermophilus

Structure of domain e2f4vM1

Domains in the same chain:

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e2f4vM1 M:2-126 HhH/H2TH H2TH H2TH

Domains in the same PDB:

e2f4vB1 B:7-243 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e2f4vC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2f4vC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2f4vD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e2f4vE1 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2f4vE2 E:74-143 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2f4vF1 F:1-97 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2f4vG1 G:12-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2f4vH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2f4vH2 H:67-137 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2f4vI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2f4vJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2f4vK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2f4vL1 L:5-122 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2f4vM1 M:2-126 HhH/H2TH H2TH H2TH
e2f4vN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2f4vO1 O:3-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2f4vP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2f4vQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2f4vR1 R:19-88 HTH HTH tri-helical
e2f4vS1 S:2-85 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e2f4vT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2f4vM1 of H-group "H2TH":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2f4vS1 M:X,Y,Z->S:x,y,z Ribosomal protein S19 Interaction Interface Pymol
e2f4vI1 M:x,y,z->I:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol