Domain ID e2fug43

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  • A: a+b two layers
  • X: FAD-linked reductases, C-terminal domain-like
  • H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
  • F: Complex1_49kDa
UID: 000006745
Type: Manual and representative domain
Range: 4:65-107,4:306-378
Ligands: SF4
PDB: 2fug
PDB Description: NADH-quinone oxidoreductase chain 4
UniProt: Q56220
Hsap BLAST neighbor: O75306
Species:

Structure of domain e2fug43

Domains in the same chain:

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e2fug42 4:35-64,4:379-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug43 4:65-107,4:306-378 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug41 4:108-305 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit

Domains in the same PDB:

e2fug13 1:7-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e2fug12 1:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e2fug11 1:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e2fug22 2:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e2fug23 2:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e2fug34 3:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e2fug32 3:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e2fug33 3:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fug36 3:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e2fug37 3:305-374,3:537-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fug38 3:375-536 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fug31 3:686-767 cradle loop barrel RIFT-related double psi
e2fug42 4:35-64,4:379-409 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug43 4:65-107,4:306-378 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug41 4:108-305 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fug51 5:1-196 Nqo5-like Nqo5-like Nqo5-like
e2fug61 6:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e2fug71 7:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e2fug91 9:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugA3 A:7-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e2fugA2 A:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e2fugA1 A:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e2fugB2 B:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e2fugB1 B:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e2fugC5 C:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e2fugC6 C:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e2fugC7 C:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugC1 C:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e2fugC2 C:305-374,C:537-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugC4 C:375-536 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugC3 C:686-767 cradle loop barrel RIFT-related double psi
e2fugD2 D:35-63,D:378-408 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugD3 D:64-106,D:305-377 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugD1 D:107-304 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugE1 E:1-196 Nqo5-like Nqo5-like Nqo5-like
e2fugF1 F:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e2fugG1 G:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugH1 H:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e2fugJ3 J:7-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e2fugJ2 J:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e2fugJ1 J:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e2fugK2 K:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e2fugK1 K:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e2fugL7 L:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e2fugL5 L:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e2fugL2 L:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugL6 L:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e2fugL8 L:305-374,L:537-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugL4 L:375-536 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugL3 L:686-767 cradle loop barrel RIFT-related double psi
e2fugM2 M:35-63,M:378-408 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM3 M:64-106,M:305-377 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM1 M:107-304 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugN1 N:1-196 Nqo5-like Nqo5-like Nqo5-like
e2fugO1 O:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e2fugP1 P:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugQ1 Q:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like
e2fugS3 S:7-249 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like
e2fugS2 S:250-333 beta-Grasp Ubiquitin-related Nqo1 middle domain-like
e2fugS1 S:334-438 Bromodomain-like Nqo1C-terminal domain-like Nqo1C-terminal domain-like
e2fugT2 T:3-74 NQO2 helical bundle domain NQO2 helical bundle domain NQO2 helical bundle domain
e2fugT1 T:75-180 Thioredoxin-like Thioredoxin-like Thioredoxin-like
e2fugU1 U:1-95 beta-Grasp Ubiquitin-related Ubiquitin-like
e2fugU9 U:96-161 iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin iron-sulfur center-binding helical hairpin
e2fugU6 U:162-246 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugU4 U:247-304 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1 Formate dehydrogenase/DMSO reductase, domain 1
e2fugU3 U:305-374,U:537-685 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugU7 U:375-536 Rossmann-like Formate dehydrogenase/DMSO reductase, domains 2 and 3 Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugU8 U:686-767 cradle loop barrel RIFT-related double psi
e2fugV2 V:35-63,V:378-408 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugV3 V:64-106,V:305-377 FAD-linked reductases, C-terminal domain-like Ni-Fe binding domain in nickel-iron hydrogenase large subunit Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugV1 V:107-304 alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugW1 W:1-196 Nqo5-like Nqo5-like Nqo5-like
e2fugX1 X:15-175 Flavodoxin-like Class I glutamine amidotransferase-like CheY-like
e2fugY1 Y:26-179 4Fe-4S ferredoxin 4Fe-4S ferredoxin 4Fe-4S ferredoxin
e2fugZ1 Z:3-129 Type III secretory system chaperone-like Frataxin-like Frataxin-like

Structural contacts of domain e2fug43 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2fug51 4:X,Y,Z->5:x,y,z Nqo5-like Interaction Interface Pymol
e2fug61 4:X,Y,Z->6:x,y,z Class I glutamine amidotransferase-like Interaction Interface Pymol
e2fug91 4:X,Y,Z->9:x,y,z 4Fe-4S ferredoxin Interaction Interface Pymol
e2fug36 4:x,y,z->3:X,Y,Z Formate dehydrogenase/DMSO reductase, domain 1 Interaction Interface Pymol
e2fug33 4:x,y,z->3:X,Y,Z 4Fe-4S ferredoxin Interaction Interface Pymol
e2fug32 4:x,y,z->3:X,Y,Z iron-sulfur center-binding helical hairpin Interaction Interface Pymol
e2fug71 4:X,Y,Z->7:x,y,z Frataxin-like Interaction Interface Pymol