ECOD: domain e2fugM3

Domain ID e2fugM3

A: a+b two layers
X: FAD-linked reductases, C-terminal domain-like
H: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
T: Ni-Fe binding domain in nickel-iron hydrogenase large subunit
F: Complex1_49kDa

UID:	000077103
Type:	Automatic domain
Parent:	e2fug43
Range:	M:64-106,M:305-377
Ligands:	SF4
PDB:	2fug
PDB Description:	NADH-quinone oxidoreductase chain 4
UniProt:	Q56220
Hsap BLAST neighbor:	O75306
Species:

Domains in the same chain:

Download Pymol

e2fugM2	M:35-63,M:378-408	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM3	M:64-106,M:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM1	M:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit

Domains in the same PDB:

e2fug13	1:7-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e2fug12	1:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e2fug11	1:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e2fug22	2:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e2fug23	2:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e2fug34	3:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2fug32	3:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e2fug33	3:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fug36	3:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e2fug37	3:305-374,3:537-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fug38	3:375-536	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fug31	3:686-767	cradle loop barrel	RIFT-related	double psi
e2fug42	4:35-64,4:379-409	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug43	4:65-107,4:306-378	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fug41	4:108-305	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fug51	5:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e2fug61	6:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e2fug71	7:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like
e2fug91	9:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugA3	A:7-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e2fugA2	A:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e2fugA1	A:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e2fugB2	B:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e2fugB1	B:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e2fugC5	C:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2fugC6	C:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e2fugC7	C:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugC1	C:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e2fugC2	C:305-374,C:537-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugC4	C:375-536	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugC3	C:686-767	cradle loop barrel	RIFT-related	double psi
e2fugD2	D:35-63,D:378-408	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugD3	D:64-106,D:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugD1	D:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugE1	E:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e2fugF1	F:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e2fugG1	G:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugH1	H:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like
e2fugJ3	J:7-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e2fugJ2	J:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e2fugJ1	J:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e2fugK2	K:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e2fugK1	K:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e2fugL7	L:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2fugL5	L:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e2fugL2	L:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugL6	L:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e2fugL8	L:305-374,L:537-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugL4	L:375-536	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugL3	L:686-767	cradle loop barrel	RIFT-related	double psi
e2fugM2	M:35-63,M:378-408	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM3	M:64-106,M:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugM1	M:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugN1	N:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e2fugO1	O:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e2fugP1	P:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugQ1	Q:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like
e2fugS3	S:7-249	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like	Nqo1 FMN-binding domain-like
e2fugS2	S:250-333	beta-Grasp	Ubiquitin-related	Nqo1 middle domain-like
e2fugS1	S:334-438	Bromodomain-like	Nqo1C-terminal domain-like	Nqo1C-terminal domain-like
e2fugT2	T:3-74	NQO2 helical bundle domain	NQO2 helical bundle domain	NQO2 helical bundle domain
e2fugT1	T:75-180	Thioredoxin-like	Thioredoxin-like	Thioredoxin-like
e2fugU1	U:1-95	beta-Grasp	Ubiquitin-related	Ubiquitin-like
e2fugU9	U:96-161	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin	iron-sulfur center-binding helical hairpin
e2fugU6	U:162-246	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugU4	U:247-304	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1	Formate dehydrogenase/DMSO reductase, domain 1
e2fugU3	U:305-374,U:537-685	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugU7	U:375-536	Rossmann-like	Formate dehydrogenase/DMSO reductase, domains 2 and 3	Formate dehydrogenase/DMSO reductase, domains 2 and 3
e2fugU8	U:686-767	cradle loop barrel	RIFT-related	double psi
e2fugV2	V:35-63,V:378-408	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugV3	V:64-106,V:305-377	FAD-linked reductases, C-terminal domain-like	Ni-Fe binding domain in nickel-iron hydrogenase large subunit	Ni-Fe binding domain in nickel-iron hydrogenase large subunit
e2fugV1	V:107-304	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit	alpha-helical domain in nickel-iron hydrogenase, large subunit
e2fugW1	W:1-196	Nqo5-like	Nqo5-like	Nqo5-like
e2fugX1	X:15-175	Flavodoxin-like	Class I glutamine amidotransferase-like	CheY-like
e2fugY1	Y:26-179	4Fe-4S ferredoxin	4Fe-4S ferredoxin	4Fe-4S ferredoxin
e2fugZ1	Z:3-129	Type III secretory system chaperone-like	Frataxin-like	Frataxin-like

Structural contacts of domain e2fugM3 of H-group "Ni-Fe binding domain in nickel-iron hydrogenase large subunit":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2fugN1	M:X,Y,Z->N:x,y,z	Nqo5-like	Interaction Interface Pymol
e2fugO1	M:X,Y,Z->O:x,y,z	Class I glutamine amidotransferase-like	Interaction Interface Pymol
e2fugP1	M:X,Y,Z->P:x,y,z	4Fe-4S ferredoxin	Interaction Interface Pymol
e2fugL5	M:x,y,z->L:X,Y,Z	iron-sulfur center-binding helical hairpin	Interaction Interface Pymol
e2fugL2	M:x,y,z->L:X,Y,Z	4Fe-4S ferredoxin	Interaction Interface Pymol
e2fugL6	M:x,y,z->L:X,Y,Z	Formate dehydrogenase/DMSO reductase, domain 1	Interaction Interface Pymol
e2fugQ1	M:X,Y,Z->Q:x,y,z	Frataxin-like	Interaction Interface Pymol