Domain ID e2gjwB4

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  • A: a/b three-layered sandwiches
  • X: Restriction endonuclease-like
  • H: tRNA-intron endonuclease catalytic domain-like
  • T: tRNA-intron endonuclease catalytic domain-like
  • F: tRNA_int_endo
UID: 000114361
Type: Automatic domain
Parent: e1a79A2
Range: B:217-307
PDB: 2gjw
PDB Description: tRNA-splicing endonuclease
UniProt: O29362
Species: Archaeoglobus fulgidus

Structure of domain e2gjwB4

Domains in the same chain:

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e2gjwB2 B:5-62 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwB3 B:64-141 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwB1 B:142-216 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwB4 B:217-307 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Domains in the same PDB:

e2gjwA2 A:6-63 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwA3 A:65-142 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwA1 A:143-217 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwA4 A:218-308 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwB2 B:5-62 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwB3 B:64-141 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwB1 B:142-216 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwB4 B:217-307 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwC2 C:5-62 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwC3 C:64-141 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwC1 C:142-216 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwC4 C:217-307 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwD2 D:6-63 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwD3 D:65-142 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like
e2gjwD1 D:143-217 Homing endonucleases-like tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like
e2gjwD4 D:218-308 Restriction endonuclease-like tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like

Structural contacts of domain e2gjwB4 of H-group "tRNA-intron endonuclease catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2gjwA1 B:x,y,z->A:X,Y,Z tRNA-intron endonuclease N-terminal domain-like Interaction Interface Pymol
e2gjwA3 B:x,y,z->A:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e2gjwA4 B:x,y,z->A:X,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e2gjwD4 B:x,y,z->D:X-1,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol
e2gjwD3 B:x,y,z->D:X-1,Y,Z tRNA-intron endonuclease catalytic domain-like Interaction Interface Pymol