Domain ID e2gv9A4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_pol_B_exo1
UID: 001822623
Type: Automatic domain
Parent: e2gv9B1
Range: A:357-640
PDB: 2gv9
PDB Description: DNA polymerase
UniProt: P04292
Hsap BLAST neighbor: P28340
Species:

Structure of domain e2gv9A4

Domains in the same chain:

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e2gv9A2 A:60-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9A3 A:138-201,A:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9A7 A:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9A4 A:357-640 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9A6 A:701-769,A:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9A1 A:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9A5 A:957-1035,A:1067-1079,A:1136-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2gv9A2 A:60-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9A3 A:138-201,A:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9A7 A:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9A4 A:357-640 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9A6 A:701-769,A:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9A1 A:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9A5 A:957-1035,A:1067-1079,A:1136-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B7 B:59-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9B6 B:138-201,B:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9B5 B:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9B1 B:357-639 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9B2 B:701-769,B:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9B3 B:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B4 B:957-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2gv9A4 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2gv9B1 A:X,Y-1,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2gv9B4 A:X,Y-1,Z->B:x,y,z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2gv9B7 A:X,Y-1,Z->B:x,y,z Herpes DNA polymerase N-terminal domain Interaction Interface Pymol
e2gv9B2 A:-X+1,Y-1/2,-Z+1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol