Domain ID e2gv9B4

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  • A: alpha bundles
  • X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B
UID: 001821876
Type: Manual and representative domain
Range: B:957-1197
PDB: 2gv9
PDB Description: DNA polymerase
UniProt: P04292
Species:

Structure of domain e2gv9B4

Domains in the same chain:

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e2gv9B7 B:59-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9B6 B:138-201,B:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9B5 B:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9B1 B:357-639 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9B2 B:701-769,B:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9B3 B:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B4 B:957-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2gv9A2 A:60-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9A3 A:138-201,A:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9A7 A:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9A4 A:357-640 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9A6 A:701-769,A:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9A1 A:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9A5 A:957-1035,A:1067-1079,A:1136-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B7 B:59-137 Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain Herpes DNA polymerase N-terminal domain
e2gv9B6 B:138-201,B:298-356 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gv9B5 B:202-297 Alpha-beta plaits Family B DNA polymerase insertion domain Family B DNA polymerase insertion domain
e2gv9B1 B:357-639 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gv9B2 B:701-769,B:829-956 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9B3 B:770-828 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B4 B:957-1197 "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I "thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2gv9B4 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2gv9A4 B:x,y,z->A:X,Y-1,Z Ribonuclease H-like Interaction Interface Pymol
e2gv9A5 B:x,y,z->A:X,Y-1,Z "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2gv9A5 B:x,y,z->A:-X,Y-1/2,-Z+1/2 "thumb" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2gv9A2 B:x,y,z->A:-X+1,Y-1/2,-Z+1/2 Herpes DNA polymerase N-terminal domain Interaction Interface Pymol