ECOD: domain e2gv9B4

Domain ID e2gv9B4

A: alpha bundles
X: "thumb" domain in bacteriophage RB69-like DNA polymerase I
H: "thumb" domain in bacteriophage RB69-like DNA polymerase I
T: "thumb" domain in bacteriophage RB69-like DNA polymerase I
F: DNA_pol_B

UID:	001821876
Type:	Manual and representative domain
Range:	B:957-1197
PDB:	2gv9
PDB Description:	DNA polymerase
UniProt:	P04292
Species:

Domains in the same chain:

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e2gv9B7	B:59-137	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain
e2gv9B6	B:138-201,B:298-356	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2gv9B5	B:202-297	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e2gv9B1	B:357-639	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2gv9B2	B:701-769,B:829-956	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9B3	B:770-828	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B4	B:957-1197	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2gv9A2	A:60-137	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain
e2gv9A3	A:138-201,A:298-356	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2gv9A7	A:202-297	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e2gv9A4	A:357-640	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2gv9A6	A:701-769,A:829-956	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9A1	A:770-828	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9A5	A:957-1035,A:1067-1079,A:1136-1197	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B7	B:59-137	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain	Herpes DNA polymerase N-terminal domain
e2gv9B6	B:138-201,B:298-356	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2gv9B5	B:202-297	Alpha-beta plaits	Family B DNA polymerase insertion domain	Family B DNA polymerase insertion domain
e2gv9B1	B:357-639	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2gv9B2	B:701-769,B:829-956	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2gv9B3	B:770-828	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2gv9B4	B:957-1197	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2gv9B4 of H-group ""thumb" domain in bacteriophage RB69-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2gv9A4	B:x,y,z->A:X,Y-1,Z	Ribonuclease H-like	Interaction Interface Pymol
e2gv9A5	B:x,y,z->A:X,Y-1,Z	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e2gv9A5	B:x,y,z->A:-X,Y-1/2,-Z+1/2	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e2gv9A2	B:x,y,z->A:-X+1,Y-1/2,-Z+1/2	Herpes DNA polymerase N-terminal domain	Interaction Interface Pymol