Domain ID e2gybN1

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  • A: few secondary structure elements
  • X: Glucocorticoid receptor-like
  • H: LIM domain-like
  • T: LIM domain-like
  • F: Ribosomal_S14
UID: 001000536
Type: Automatic domain
Parent: e2qalN1
Range: N:40-100
PDB: 2gyb
PDB Description:
Hsap BLAST neighbor: O60783
Species:

Structure of domain e2gybN1

Domains in the same chain:

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e2gybN1 N:40-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like

Domains in the same PDB:

e2gybC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e2gybC1 C:106-206 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e2gybE1 E:9-77 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e2gybE2 E:78-156 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2gybF1 F:1-95 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e2gybG1 G:19-155 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e2gybH1 H:3-65 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e2gybH2 H:66-128 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e2gybJ1 J:5-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e2gybK1 K:12-127 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2gybL1 L:22-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2gybN1 N:40-100 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e2gybO1 O:2-87 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e2gybP1 P:1-78 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e2gybR1 R:6-74 HTH HTH tri-helical
e2gybT1 T:4-86 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e2gybN1 of H-group "LIM domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2gybC2 N:X,Y,Z->C:x,y,z KH-domains Interaction Interface Pymol