Domain ID e2hgjY2

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  • A: a+b complex topology
  • X: Ribosomal protein TL5/L25 C-terminal domain-like
  • H: Ribosomal protein TL5/L25 C-terminal domain-related
  • T: Ribosomal protein TL5/L25 C-terminal domain-related
  • F: Ribosomal_TL5_C
UID: 000084075
Type: Automatic domain
Parent: e1feuA2
Range: Y:93-179
PDB: 2hgj
PDB Description:
Species:

Structure of domain e2hgjY2

Domains in the same chain:

Download Pymol

e2hgjY1 Y:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2hgjY2 Y:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related

Domains in the same PDB:

e2hgj11 1:1-67 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2hgj21 2:2-60 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2hgj31 3:1-71 Ribosomal protein L31p Ribosomal protein L31p Ribosomal protein L31p
e2hgj41 4:4-60 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2hgj51 5:9-53 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2hgj61 6:1-49 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2hgj71 7:2-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2hgj81 8:1-37 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2hgjC1 C:5-66,C:159-227 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1 a+b domain in Ribosomal protein L1
e2hgjC2 C:67-158 Flavodoxin-like Rossmann-like domain in Ribosomal protein L1 Rossmann-like domain in Ribosomal protein L1
e2hgjD2 D:5-126 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2hgjD3 D:127-276 SH3 SH3 SH3
e2hgjF1 F:3-208 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2hgjG1 G:4-182 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2hgjH1 H:12-82 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2hgjH2 H:83-171 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2hgjK2 K:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2hgjK1 K:56-148 Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain
e2hgjL3 L:2-72 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2hgjL4 L:73-139 HTH HTH Ribosomal protein L11, C-terminal domain
e2hgjM1 M:2-138 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2hgjN1 N:1-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2hgjQ1 Q:14-118 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2hgjT1 T:3-117 PABP domain-like Ribosomal protein L20 Ribosomal protein L20
e2hgjU1 U:1-101 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2hgjV1 V:2-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2hgjW1 W:3-95 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2hgjX2 X:1-110 SH3 SH3 SH3
e2hgjY1 Y:3-92 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2hgjY2 Y:93-179 Ribosomal protein TL5/L25 C-terminal domain-like Ribosomal protein TL5/L25 C-terminal domain-related Ribosomal protein TL5/L25 C-terminal domain-related
e2hgjZ1 Z:1-85 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein

Structural contacts of domain e2hgjY2 of H-group "Ribosomal protein TL5/L25 C-terminal domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1feuA2 Y:x,y,z->P:X,Y,Z Ribosomal protein TL5/L25 C-terminal domain-related Interaction Interface Pymol
e2hgjL4 Y:x,y,z->L:X,Y,Z HTH Interaction Interface Pymol