Domain ID e2ibmA12

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: SecA_DEAD
UID: 001167068
Type: Automatic domain
Parent: e1tf5A3
Range: A:1-220,A:343-389
Ligands: ADP
PDB: 2ibm
PDB Description: PREPROTEIN TRANSLOCASE SECA SUBUNIT
UniProt: P28366
Species: Bacillus subtilis

Structure of domain e2ibmA12

Domains in the same chain:

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e2ibmA12 A:1-220,A:343-389 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA10 A:221-342 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmA9 A:390-564 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA11 A:565-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Domains in the same PDB:

e2ibmA12 A:1-220,A:343-389 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA10 A:221-342 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmA9 A:390-564 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmA11 A:565-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA
e2ibmB8 B:11-226,B:348-395 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB7 B:227-348 Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA Pre-protein crosslinking domain of SecA
e2ibmB6 B:396-570 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2ibmB5 B:571-780 Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA Helical scaffold and wing domains of SecA

Structural contacts of domain e2ibmA12 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2ibmB5 A:X,Y,Z->B:x,y,z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ibmB6 A:X,Y,Z->B:x,y,z P-loop domains-related Interaction Interface Pymol
e2ibmB5 A:-X-1/2,Y,-Z->B:x,y,z Helical scaffold and wing domains of SecA Interaction Interface Pymol
e2ibmA12 A:x,y,z->A:X,-Y,-Z-1/2 P-loop domains-related Interaction Interface Pymol
e2ibmA12 A:X,-Y,-Z-1/2->A:x,y,z P-loop domains-related Interaction Interface Pymol